Bioconductor Tcga cnv

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TCGA CNV correlation between mRNA exprssion and CNV

updated 8.9 years ago by spulido99 • 0 • written 9.8 years ago by ycding ▴ 10

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cn.mops cnvtools tcga cnv

updated 9.2 years ago by Günter Klambauer ▴ 540 • written 9.2 years ago by vakul.mohanty ▴ 20

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tcga cnv gene symbol coordinate

updated 2.2 years ago by James W. MacDonald 67k • written 9.7 years ago by NS ▴ 60

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

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Answer: EdgeR Biological CVs

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