Bioconductor Tcga cnv

Showing : tcga cnv • reset

0

votes

5

replies

8.8k

views

TCGA CNV correlation between mRNA exprssion and CNV

updated 9.0 years ago by spulido99 • 0 • written 9.9 years ago by ycding ▴ 10

0

votes

4

replies

2.2k

views

cn.mops cnvtools tcga cnv

updated 9.3 years ago by Günter Klambauer ▴ 540 • written 9.3 years ago by vakul.mohanty ▴ 20

27

votes

21

replies

25k

views

tcga cnv gene symbol coordinate

updated 2.3 years ago by James W. MacDonald 68k • written 9.8 years ago by NS ▴ 60

3 results • Page 1 of 1

Recent ...

Replies

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Votes

Answer: normalizatino of dna methylation EPIC data

Awards • All